<!-- ============================================================= -->
<!-- MODULE: Default Element Classes Module -->
<!-- VERSION: 3.0 -->
<!-- DATE: Feb 2008 -->
<!-- -->
<!-- ============================================================= -->
<!-- ============================================================= -->
<!-- PUBLIC DOCUMENT TYPE DEFINITION -->
<!-- TYPICAL INVOCATION -->
<!--
"-//NLM//DTD Default Element Classes Module v3.0 20080202//EN"
Delivered as file "default-classes3.ent" -->
<!-- ============================================================= -->
<!-- ============================================================= -->
<!-- SYSTEM: Journal Archiving and Interchange DTD of the -->
<!-- Archiving and Interchange DTD Suite -->
<!-- -->
<!-- PURPOSE: To declare the Parameter Entities (PEs) used to -->
<!-- define the default element classes. Classes are -->
<!-- OR-groups of elements that are defined together -->
<!-- to be used in mixes and in Element Declarations. -->
<!-- -->
<!-- Note: Since PEs must be declared before they -->
<!-- are used, this module must be called before all -->
<!-- content modules that declare elements, and after -->
<!-- the class customization module (if any). -->
<!-- -->
<!-- CONTAINS: PEs that define the element classes to be used -->
<!-- in the Journal Archive and Interchange DTD Suite -->
<!-- modules. -->
<!-- -->
<!-- CREATED FOR: -->
<!-- Digital Archive of Journal Articles -->
<!-- National Center for Biotechnology Information -->
<!-- (NCBI) -->
<!-- National Library of Medicine (NLM) -->
<!-- -->
<!-- ORIGINAL CREATION DATE: -->
<!-- August 2004 -->
<!-- -->
<!-- CREATED BY: Deborah Lapeyre (Mulberry Technologies, Inc.) -->
<!-- B. Tommie Usdin (Mulberry Technologies, Inc.) -->
<!-- -->
<!-- Suggestions for refinements and enhancements to -->
<!-- this DTD should be sent in email to: -->
<!-- archive-dtd@ncbi.nlm.nih.gov -->
<!-- ============================================================= -->
<!-- ============================================================= -->
<!-- DTD VERSION/CHANGE HISTORY -->
<!-- ============================================================= -->
<!--
Version Reason/Occasion (who) vx.x (yyyy-mm-dd)
=============================================================
Version 3.0 (DAL/BTU) v3.0 (2007-10-31)
Version 3.0 is the first non-backward-compatible release.
In addition to the usual incremental changes, some
elements and attributes have been renamed and/or remodeled
to better meet user needs and to increase tag set consistency.
All module change histories are available through the Tag Suite
web site at http://dtd.nlm.nih.gov.
Details on version 3.0 are available at
http://dtd.nlm.nih.gov/3.0.
1. Updated public identifier to "v3.0 20080202//EN" -->
<!-- ============================================================= -->
<!-- CLASSES FOR COMMON ELEMENTS (%common.ent;) -->
<!-- ============================================================= -->
<!-- ADDRESS CLASS ELEMENTS -->
<!-- Potential element components of an address;
not a proper class -->
<!ENTITY % address.class
"addr-line | country | fax |
institution | phone" >
<!-- ADDRESS LINE CLASS ELEMENTS -->
<!-- Potential element components of an address;
line not a proper class -->
<!ENTITY % address-line.class
"country | fax | institution | phone " >
<!-- CITATION CLASS ELEMENTS -->
<!-- Reference to an external document, as used
within, for example, the text of a
paragraph -->
<!ENTITY % citation.class
"element-citation | mixed-citation" >
<!-- DEFINITION CLASS ELEMENTS -->
<!-- Definitions and other elements to match
with terms and abbreviations -->
<!ENTITY % def.class "def" >
<!-- DEGREE CLASS -->
<!-- The academic or professional degrees that
accompany a person's name -->
<!ENTITY % degree.class "degrees" >
<!-- IDENTIFIER CLASS ELEMENTS -->
<!-- DOIs and other identifiers are used by
publishers at many levels, for example for
an <abstract> or a <figure>. -->
<!ENTITY % id.class "object-id" >
<!-- LABEL CLASS -->
<!-- The label element, used to hold the number
or character of a labeled object such as a
table or footnote -->
<!ENTITY % label.class "label" >
<!-- NOTE CLASS ELEMENTS -->
<!-- A note may appear at the end of an Article
or at the end of a Table. For example, a
typical end-of-article note is a
"Note in Proof". -->
<!ENTITY % note.class "note" >
<!-- ============================================================= -->
<!-- PERSON NAMING ELEMENTS (%common.ent;) -->
<!-- ============================================================= -->
<!-- INVESTIGATOR NAMES CLASS -->
<!-- The elements used to name the personal names
for principal investigators. -->
<!ENTITY % investigator-name.class
"name | string-name" >
<!-- NAMES CLASS -->
<!-- The elements used to name the personal names
for individuals and the collaboration names
for groups -->
<!ENTITY % name.class "anonymous | collab | name | string-name" >
<!-- PERSONAL NAMES CLASS -->
<!-- The element components of a person's name,
for the name of a contributor -->
<!ENTITY % person-name.class
"degrees | given-names | prefix | surname |
suffix" >
<!-- STRING NAME CLASS -->
<!-- The element <string-name> is most useful
inside citations, but some tag sets restrict
its use in metadata. -->
<!ENTITY % string-name.class
"string-name" >
<!-- RECIPIENT NAMES CLASS -->
<!-- The elements used to name the personal names
or corporate names (such as Labs) for
funded award recipients -->
<!ENTITY % recipient-name.class
"name | institution | string-name" >
<!-- ============================================================= -->
<!-- ARTICLE METADATA CONTRIBUTOR CLASSES; -->
<!-- ============================================================= -->
<!-- CONTRIBUTOR CLASS -->
<!-- Sometimes only the <contrib> element needs to
be added to a model. Used mostly in the
model for <contrib-group>. -->
<!ENTITY % contrib.class
"contrib" >
<!-- CONTRIBUTOR GROUP CLASS -->
<!-- Sometimes only the <contrib-group> element
needs to be added to a model. -->
<!ENTITY % contrib-group.class
"contrib-group" >
<!-- CONTRIBUTOR INFORMATION -->
<!-- Metadata about a contributor -->
<!ENTITY % contrib-info.class
"address | aff | author-comment | bio |
email | etal | ext-link | on-behalf-of |
role | uri | xref" >
<!-- CONTRIBUTOR INFORMATION FOR REFERENCES -->
<!-- The additions and alternatives to a person's
name that may be used inside the element
<person-group> -->
<!ENTITY % person-group-info.class
"aff | etal" >
<!-- ============================================================= -->
<!-- ARTICLE METADATA CLASSES %articlemeta.ent; -->
<!-- ============================================================= -->
<!-- CONFERENCE CLASS -->
<!-- The element components of the description
of a conference; not a proper class -->
<!ENTITY % conference.class
"conf-date | conf-name | conf-num |
conf-loc | conf-sponsor | conf-theme |
conf-acronym | string-conf" >
<!-- CORRESPONDING AUTHOR CLASS -->
<!-- Elements associated with the corresponding
author -->
<!ENTITY % corresp.class
"corresp" >
<!-- DATE CLASS ELEMENTS -->
<!-- Dates and other matters of history -->
<!ENTITY % date.class "date | string-date" >
<!-- DATE PARTS CLASS ELEMENTS -->
<!-- Components of date-style elements -->
<!ENTITY % date-parts.class
"day | month | season | year" >
<!-- JOURNAL IDENTIFIER CLASS ELEMENTS -->
<!-- The <journal-id> element and any synonyms.
Created for use inside <related-article>. -->
<!ENTITY % journal-id.class
"journal-id" >
<!-- KEYWORD CLASS ELEMENTS -->
<!-- Keywords and any keyword-synonyms -->
<!ENTITY % kwd.class "kwd | compound-kwd" >
<!-- LICENSE PARAGRAPH CLASS ELEMENTS -->
<!-- New paragraph type created for restricted
use inside <license>. -->
<!ENTITY % license-p.class
"license-p" >
<!-- TITLE CLASS -->
<!-- Title metadata element that can be used
to provide article-like metadata about
other objects, for example a <supplement> -->
<!ENTITY % title.class "title" >
<!-- ============================================================= -->
<!-- BACK MATTER CLASSES (%backmatter.ent;) -->
<!-- ============================================================= -->
<!-- JUST APPENDIX CLASS -->
<!-- The appendix and only the appendix -->
<!ENTITY % app.class "app" >
<!-- BACK MATTER CLASS -->
<!-- Ancillary elements, typically used in the
back matter of an article, section, etc. -->
<!ENTITY % back.class "ack | app-group | bio | fn-group |
glossary | ref-list" >
<!-- FRONT MATTER CLASS -->
<!-- Ancillary elements, typically used in the
front matter of an article, book, etc. . -->
<!ENTITY % front.class "ack | bio | fn-group | glossary" >
<!-- FRONT AND BACK CLASS -->
<!-- Ancillary elements, typically used in the
front or back matter of an article -->
<!ENTITY % front-back.class
"notes" >
<!-- SECTION BACK MATTER CLASS -->
<!-- Ancillary elements, typically used in the
back matter of a section, etc. -->
<!ENTITY % sec-back.class
"fn-group | glossary | ref-list" >
<!-- JUST SIGNATURE CLASS -->
<!-- The signature and only the signature <sig>
for use inside <sig-block>s -->
<!ENTITY % sig.class "sig" >
<!-- ============================================================= -->
<!-- CLASSES USED IN DISPLAY ELEMENTS -->
<!-- ============================================================= -->
<!-- ACCESSIBILITY CLASS ELEMENTS -->
<!-- Elements added to make it easier to process
journal articles in ways that are more
accessible to people and devices with special
needs, for example the visually handicapped.
<alt-text> is a short phrase description of
an objects, <long-desc> is a more complete
description of the content or intent of an
object. -->
<!ENTITY % access.class "alt-text | long-desc" >
<!-- CAPTION DISPLAY ELEMENTS -->
<!-- Basic figure display elements -->
<!ENTITY % caption.class
"caption" >
<!-- DISPLAY ELEMENT BACK MATTER ELEMENTS -->
<!-- Miscellaneous stuff (such as photo credits or
copyright statement) at the end of a display
element such as a figure or a boxed text
element such as a sidebar. -->
<!ENTITY % display-back-matter.class
"attrib | permissions" >
<!-- ============================================================= -->
<!-- DISPLAY ELEMENTS CLASSES -->
<!-- ============================================================= -->
<!-- DISPLAY CLASS ELEMENTS -->
<!-- Graphical or other image-related elements.
The display elements may occur within
the text of a table cell or paragraph
although they are typically at the same
hierarchical level as a paragraph. -->
<!ENTITY % block-display.class
"address | alternatives | array |
boxed-text | chem-struct-wrap |
fig | fig-group | graphic | media |
preformat | supplementary-material |
table-wrap | table-wrap-group" >
<!ENTITY % block-display-noalt.class
"address | array |
boxed-text | chem-struct-wrap |
fig | fig-group | graphic | media |
preformat | supplementary-material |
table-wrap | table-wrap-group" >
<!-- FLOATING DISPLAY CLASS ELEMENTS -->
<!-- Block display elements that can take the
position attribute, and thus may be floating
as opposed to fixed in narrative position in
an article. Created for use as the content
of <floats-group>. -->
<!ENTITY % floats-display.class
"alternatives | boxed-text |
chem-struct-wrap | fig | fig-group |
graphic | media | preformat |
supplementary-material |
table-wrap | table-wrap-group" >
<!-- FIGURE DISPLAY ELEMENTS -->
<!-- Basic figure display elements -->
<!ENTITY % fig-display.class
"fig" >
<!-- INLINE DISPLAY CLASS ELEMENTS -->
<!-- Non-block display elements that set or
display inline with the text -->
<!ENTITY % inline-display.class
"alternatives | inline-graphic |
private-char" >
<!ENTITY % inline-display-noalt.class
"inline-graphic | private-char" >
<!-- MOST BASIC DISPLAY ELEMENTS -->
<!-- Just the few display elements that are
simple display objects: a picture, a movie,
a sound file. -->
<!ENTITY % just-base-display.class
"alternatives | graphic | media" >
<!ENTITY % just-base-display-noalt.class
"graphic | media" >
<!-- SIMPLE DISPLAY ELEMENTS -->
<!-- The simplest and most basic of the Display
Class elements, which may be allowed in many
places, for example, inside other Display
Class elements or inside the cell of a
Table -->
<!ENTITY % simple-display.class
"alternatives | array | graphic | media |
preformat" >
<!ENTITY % simple-display-noalt.class
"array | graphic | media | preformat" >
<!-- SIMPLE TABLE DISPLAY ELEMENTS -->
<!-- Very similar to the simple-display.class, but
Table Wrappers <table-wrap> should contain
<table>s, <oasis:table>s, etc., not
arrays. -->
<!ENTITY % simple-intable-display.class
"alternatives | chem-struct-wrap | graphic |
media | preformat" >
<!-- INSIDE CHEMICAL STRUCTURE ELEMENTS -->
<!-- Very similar to the simple-display.class, but
for use inside <chem-struct-wrap>, so it
can contain both <chem-struct> and
<textual-form> -->
<!ENTITY % inside-chem-struct-wrap.class
"alternatives | chem-struct | graphic |
media | preformat | textual-form" >
<!-- ALTERNATIVES DISPLAY CLASS ELEMENTS -->
<!-- Display elements that can be alternatives to
each other inside an alternatives element.
-->
<!ENTITY % alternatives-display.class
"array | chem-struct | graphic |
inline-graphic |
inline-supplementary-material |
media | textual-form | preformat |
private-char | supplementary-material |
table" >
<!-- ============================================================= -->
<!-- MATH CLASSES (%math.ent;) -->
<!-- ============================================================= -->
<!-- MATHEMATICAL EXPRESSIONS AND FORMULAE
CLASS ELEMENTS -->
<!ENTITY % block-math.class
"disp-formula | disp-formula-group" >
<!-- CHEMICAL STRUCTURE WRAPPER CLASS -->
<!ENTITY % chem-struct-wrap.class
"chem-struct-wrap" >
<!-- INLINE MATHEMATICAL EXPRESSIONS MIX CLASS
ELEMENTS -->
<!ENTITY % inline-math.class
"chem-struct | inline-formula" >
<!-- MATHEMATICAL EXPRESSIONS CLASS ELEMENTS -->
<!ENTITY % math.class "tex-math | mml:math" >
<!-- SIMPLE MATHML CLASS -->
<!ENTITY % simple-math.class
"mml:math" >
<!-- ============================================================= -->
<!-- FORMAT CLASSES (%format.ent;) -->
<!-- ============================================================= -->
<!-- APPEARANCE CLASS ELEMENTS -->
<!-- Names those elements (inherited from the
XHTML table DTD that are only concerned with
appearance, not with structure or content.
Use of these elements is to be discouraged.-->
<!ENTITY % appearance.class
"hr" >
<!-- FORCED BREAK FORMATTING CLASS ELEMENTS -->
<!-- Element to force a formatting break such as
a line break -->
<!ENTITY % break.class "break" >
<!-- EMPHASIS/RENDITION ELEMENTS -->
<!-- Elements concerning with marking the location
of typographical emphasis (highlighting)
DTD Design Note: There are no emphasis
elements for <fractur>, <openface> (black
board), <script>, etc. because this DTD
recommends the use of the STIX extensions
to accomplish this, as soon as they are
available. -->
<!ENTITY % emphasis.class
"bold | italic | monospace |
overline | overline-start | overline-end |
roman | sans-serif | sc | strike |
underline | underline-start | underline-end">
<!-- UP/DOWN RENDITION ELEMENTS -->
<!ENTITY % subsup.class "sub | sup" >
<!-- ============================================================= -->
<!-- LINK CLASSES (%link.ent;) -->
<!-- ============================================================= -->
<!-- ADDRESS LINK CLASS ELEMENTS -->
<!-- Link elements that can be used inside
addresses. This is essentially the three
generic external links.
(Note: in earlier releases, this Parameter
Entity was named %address-elements;,
although it functioned as a class.) -->
<!ENTITY % address-link.class
"email | ext-link | uri" >
<!-- JOURNAL ARTICLE LINK CLASS ELEMENTS -->
<!-- Links used inside journal articles, to point
to related material -->
<!ENTITY % article-link.class
"inline-supplementary-material |
related-article | related-object" >
<!-- FOOTNOTE LINKS CLASS -->
<!-- Only the most basic, internal links -->
<!ENTITY % fn-link.class
"fn" >
<!-- FOOTNOTE GROUP CLASS -->
<!-- Collections of footnotes -->
<!ENTITY % fn-group.class
"fn-group" >
<!-- RELATED ARTICLE LINKS CLASS -->
<!-- For using <related-article> at the paragraph
level -->
<!ENTITY % related-article.class
"related-article | related-object" >
<!-- SIMPLE LINKS/CROSS-REFERENCES CLASS -->
<!-- The smaller and simpler linking elements
that might be inside, for example, a
Keyword <kwd> -->
<!ENTITY % simple-link.class
"fn | target | xref" >
<!-- ============================================================= -->
<!-- LIST CLASSES (%list.ent;) -->
<!-- ============================================================= -->
<!-- LIST CLASS ELEMENTS -->
<!-- All the types of lists that may occur
as part of the text, therefore excluding
Bibliographic Reference Lists <ref-list> -->
<!ENTITY % list.class "def-list | list" >
<!-- ============================================================= -->
<!-- PARAGRAPH CLASSES (%para.ent;) -->
<!-- ============================================================= -->
<!-- REST OF PARAGRAPH CLASS -->
<!-- Information for the reader that is at the
same structural level as a Paragraph.
Contains all paragraph-level objects that are
not also used inside tables and excepting
also the paragraph element itself -->
<!ENTITY % rest-of-para.class
"ack | disp-quote | speech | statement |
verse-group" >
<!-- IN TABLE PARAGRAPH CLASS -->
<!-- The simpler of the paragraph-level elements
that might be found inside a table cell -->
<!ENTITY % intable-para.class
"disp-quote | speech | statement |
verse-group" >
<!-- JUST PARAGRAPH CLASS -->
<!-- To hold the Paragraph element, alone. -->
<!ENTITY % just-para.class
"p" >
<!-- ============================================================= -->
<!-- PHRASE CLASSES (%phrase.ent;) -->
<!-- ============================================================= -->
<!-- FUNDING CLASS ELEMENTS -->
<!-- Small inline elements, that surround a word
or phrase in the text to identify pieces of
funding metadata. where such material is not
pulled out separately but just mixed into
text as phrases or sentences within a
paragraph. These elements may be used to mark,
for example, the <award-id> (such as a grant
number or contract number) or the
<funding-source> such as the sponsoring
organization or trust that awarded the grant.
-->
<!ENTITY % funding.class
"award-id | funding-source | open-access" >
<!-- PHRASE CLASS ELEMENTS -->
<!-- Small inline elements, that surround a word
or phrase in the text because the subject
(content) should be identified as something
special or different -->
<!ENTITY % phrase.class "abbrev | milestone-end | milestone-start |
named-content | styled-content" >
<!-- STYLED CONTENT CLASS ELEMENTS -->
<!-- The <styled-content> element alone, so it
can be used in places where emphasis is used.
-->
<!ENTITY % styled-content.class
"styled-content" >
<!-- PHRASE CONTENT CLASS ELEMENTS -->
<!-- Small inline elements, that surround a word
or phrase in the text because the subject
(content) should be identified as something
special or different. This class in is
intended to be a subset of the Phrase Class,
for use in restricted situations, such as
within metadata paragraphs, to record
publisher-identified semantic or usage
material. -->
<!ENTITY % phrase-content.class
"named-content | styled-content" >
<!-- PRICE CLASS ELEMENTS -->
<!-- Created to hold the <price> element so that
it can be selectively added to elements,
initially to <product>. -->
<!ENTITY % price.class "price" >
<!-- PRODUCT ELEMENTS -->
<!-- Created to hold the <product> element so that
it can be selectively added to elements,
initially to <note>. -->
<!ENTITY % product.class
"product" >
<!-- ============================================================= -->
<!-- REFERENCES CLASSES (references.ent) -->
<!-- ============================================================= -->
<!-- BIBLIOGRAPHIC REFERENCE (CITATION) CLASS -->
<!-- The elements that may be included inside a
citation (bibliographic reference), either
in an all-element-content (<element-citation>)
or in a mixed-content citation
(<mixed-citation>). Originally, added
<date> and <string-date> -->
<!ENTITY % references.class
"annotation | article-title | chapter-title |
collab | comment | conf-date | conf-loc |
conf-name | conf-sponsor | date |
date-in-citation | day | edition | email |
elocation-id | etal | ext-link | fpage |
gov | institution | isbn | issn |
issue | issue-id | issue-part | issue-title |
lpage | month | name | object-id |
page-range | part-title |
patent | person-group | pub-id |
publisher-loc | publisher-name | role |
season | series | size | source | std |
string-name | supplement |
trans-source | trans-title | uri |
volume | volume-id | volume-series | year" >
<!-- JUST REFERENCE-LIST CLASS -->
<!-- The reference list and only the reference
list -->
<!ENTITY % ref-list.class
"ref-list" >
<!-- ============================================================= -->
<!-- SECTION CLASS (%section.ent;) -->
<!-- ============================================================= -->
<!-- SECTION CLASS ELEMENTS -->
<!-- Information for the reader that is at the
same structural level as a Section, which is
a headed structure full of smaller elements
such as paragraphs. -->
<!ENTITY % sec.class "sec" >
<!-- ============================================================= -->
<!-- TABLE MODEL CLASSES -->
<!-- ============================================================= -->
<!-- JUST TABLE CLASS -->
<!-- To include just a table <table-wrap>
element -->
<!ENTITY % just-table.class
"table-wrap" >
<!-- TABLE CLASS ELEMENTS -->
<!-- Elements that will be used to contain the
rows and columns inside the Table Wrapper
element <table-wrap>. The following elements
can be set up for inclusion:
XHTML Table Model table -->
<!ENTITY % table.class "table" >
<!-- TABLE FOOT CLASS -->
<!-- Elements to include at the end of a table
in the table. -->
<!ENTITY % table-foot.class
"table-wrap-foot" >
<!-- TABLE BODY CLASS -->
<!-- To include just a table <table-wrap>
element -->
<!ENTITY % tbody.class "tbody" >
<!-- ================== End Journal Suite Default Classes ======= -->